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Using single‐plant‐omics in the field to link maize genes

Using single‐plant‐omics in the field to link maize genes

Using single-plant-omics in the field to link maize genes ...

Using single-plant-omics in the field to link maize genes to functions and phenotypes. Mol Syst Biol. 2020 Dec;16 (12):e9667. doi: 10.15252/msb.20209667.

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Using single‐plant‐omics in the field to link maize genes ...

Dec 21, 2020  Using single-plant-omics in the field to link maize genes to functions and phenotypes. Daniel Felipe Cruz. ... grown in the same field and used the resulting data to

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Using single‐plant‐omics in the field to link maize genes ...

Article Using single-plant-omics in the field to link maize genes to functions and phenotypes Daniel Felipe Cruz1,2,†, Sam De Meyer1,2,†, Joke Ampe1,2, Heike

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Using single-plant -omics in the field to link maize genes ...

Apr 06, 2020  Using single-plant -omics in the field to link maize genes to functions and phenotypes Daniel Felipe Cruz , Sam De Meyer , Joke Ampe , Heike Sprenger , Dorota Herman

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Using single-plant -omics in the field to link maize genes ...

Apr 06, 2020  1 Using single-plant -omics in the field to link maize genes to 2 functions and phenotypes 3 4 Daniel Felipe Cruza,b,§, Sam De Meyera,b,§, Joke Ampea,b, Heike

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Using single‐plant‐omics in the field to link maize genes ...

Molecular Systems Biology (2020-12-01) . Using single‐plant‐omics in the field to link maize genes to functions and phenotypes

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Using single‐plant‐omics in the field to link maize genes ...

Most of our current knowledge on plant molecular biology is based on experiments in controlled laboratory environments. However, translating this knowledge from the

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Flowering Time-Regulated Genes in Maize Include the ...

Jul 25, 2016  Using single-plant-omics in the field to link maize genes to functions and phenotypes. Cruz DF, De Meyer S, Ampe J, Sprenger H, Herman D, Van Hautegem T, De Block J

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(PDF) Omics Approaches in Maize Improvement

Downloaded by [Debmalya Barh] at 21:18 30 December 2013. 79 Omics Approa ches in Maize Improveme nt. improve the ef ciency and precision of conv entional plant

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Transcriptome-Based Prediction of Complex Traits in Maize ...

Oct 22, 2019  Using maize (Zea mays) genetic markers and transcript levels from seedlings to predict mature plant traits, we found that transcript and genetic marker models have

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Flowering Time-Regulated Genes in Maize Include the ...

Jul 25, 2016  Using single-plant-omics in the field to link maize genes to functions and phenotypes. Cruz DF, De Meyer S, Ampe J, Sprenger H, Herman D, Van Hautegem T, De Block J, Inzé D, Nelissen H, Maere S. Mol Syst Biol, 16(12):e9667, 01 Dec 2020

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Tom HAUTEGEM Ghent University, Gent UGhent VIB ...

Using single‐plant‐omics in the field to link maize genes to functions and phenotypes. ... Using single-plant -omics in the field to link maize genes to functions and phenotypes. Preprint.

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Unraveling Root Development Through Single-Cell Omics and ...

May 04, 2021  For single-cell omics analyses, the plant cell wall is normally enzymatically digested allowing cell disaggregation to generate protoplasts (Birnbaum et al., 2005). As protoplasting facilitates high throughput processing in subsequent single-cell isolation methods, it has become one of the preferred techniques to disaggregate plant cells ...

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The promise of single-cell genomics in plants

Recent single-cell publications in Arabidopsis have highlighted the promise of single-cell in plants. All of these have used the well characterized Arabidopsis root, either using whole-roots [2••,5••,9••], or specifically enriching for root tips [8••,10••]. Because plants have

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Investigation and development of maize fused network ...

Aug 01, 2019  Maize (Zea mays) is an important staple food in many regions of the world with total production higher than other grain crops, such as wheat or rice.Despite its status as a food staple in many areas, most maize is used for animal feed and ethanol fuel. Maize is also an important model organism for plant development, physiology, and genetics studies in addition to its economic value.

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Genomic basis underlying the metabolome-mediated drought ...

Sep 06, 2021  A drought-responsive metabolome landscape of a global diverse maize association panel. To understand how metabolites function in maize drought response and tolerance, we grew a maize set of 385 natural inbred lines in a greenhouse under WW and DS conditions (Additional file 1, Figure S1a; see “Materials and methods”) [].This maize set consisted of 135 temperate inbred lines,

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Sustainable agriculture in the era of omics: knowledge ...

One application of omics data is to identify functional genes that are relevant for sus-tainable agriculture (Fig. 1). These genes can then be manipulated to develop new var-ieties and crops for sustainable farming. Specifically, successful identification of genes using omics data is

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Holo-omics for deciphering plant-microbiome interactions ...

Mar 24, 2021  Table 1 Recent studies employing holo-omics in the field of plant microbiome research. This table lists twenty recent publications from the period of 2014 through 2020 that employ a holo-omics approach to explore plant and microbial interactions within the above or below ground plant microbiome. A subset of these studies is also indicated in ...

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Omics-based hybrid prediction in maize SpringerLink

Jun 24, 2017  Genetic material and phenotyping. The entire genetic material consisted of a set of 1536 hybrids, denoted as \(H_\mathrm{{Tot}}\), produced in 16 factorial mating designs between 142 Dent and 103 Flint lines from the maize breeding program at the University of Hohenheim, on which agronomic data for silage maize production, as well as pedigree and genomic data, were available.

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Unraveling lipid metabolism in maize with time‐resolved ...

Jan 31, 2018  With respect to lipid metabolism in maize, a recent effort based on the integration of the findings from (i) a GWAS of fatty acids using 368 maize inbred lines, (ii) QTL mapping of oil concentration and composition in the maize kernel of maize, using a B73 × By804 recombinant inbred ine (RIL) population, and (iii) a co-expression network based ...

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Root angle in maize influences nitrogen capture and is ...

Jun 25, 2021  Four experiments (2016, 2017, 2018 and 2019) were performed to study angle phenotypes in low and high nitrogen environments. At an thesis, two plants per plot were evaluated using the shovel omics method (Trachsel et al., 2011). Shoot biomass was collected, and shoot material was dried at 60°C.

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Bulk to Individuality: Specifying Plants’ Cellular ...

Jan 01, 2019  15.2.4.2. Pollen Grain Proteomics. Proteomics study in isolated individual pollen provides one of the most comprehensive data sets in plant single-cell omics (Dai and Chen, 2012).Pollen proteomics studies were carried out in a good number of plant taxa including Arabidopsis, tomato, rice, maize, and Lilium spp. among angiosperms and Picea meyeri, Pinus bungeana, and Pinus strobes

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Multi-omics analysis of the development and fracture ...

Jun 03, 2019  The maize stalk is an important mechanical supporting tissue. The stalk fracture resistance is closely related to lodging resistance, and thus the

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MODEM: multi-omics data envelopment and mining in maize

MODEM is a comprehensive database of maize multidimensional omics data, including genomic, transcriptomic, metabolic and phenotypic information from the cellular to individual plant level. This initial release contains approximately 1.06 M high quality SNPs for 508 diverse inbred lines obtained by c

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Single Cell Omics Volume 2 Technological Advances Free Pdf ...

Using Single‐plant‐omics In The Field To Link Maize Genes ...Molecular Layers That Articulate The Phenotype From The Genotype, Such As The Transcriptome Or Metabolome, Are Ignored. Conse-quently, Little Mechanistic Insight Is Gained From GWAS

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MODEM: multi-omics data envelopment and mining in maize

MODEM is a comprehensive database of maize multidimensional omics data, including genomic, transcriptomic, metabolic and phenotypic information from the cellular to individual plant level. This initial release contains approximately 1.06 M high quality SNPs for 508 diverse inbred lines obtained by c

get price

Investigation and development of maize fused network ...

Aug 01, 2019  Maize (Zea mays) is an important staple food in many regions of the world with total production higher than other grain crops, such as wheat or rice.Despite its status as a food staple in many areas, most maize is used for animal feed and ethanol fuel. Maize is also an important model organism for plant development, physiology, and genetics studies in addition to its economic value.

get price

Research highlights, The Plant Genome, Volume 14, Issue 2 ...

Jul 19, 2021  Genomic prediction results also showed that polymorphic markers throughout the maize genome had different effect sizes for plant height belonging to different time points. These results demonstrate temporal phenotype data of complex traits (e.g., plant height) should be considered as a phenomic source worth characterizing for use in maize breeding.

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Systems biology for crop improvement - Pazhamala - 2021 ...

May 05, 2021  The above-mentioned network inference studies were within a single omics type; however, several valuable insights were provided through integration across different omics types. Complex network interactions in nitrogen metabolism and signaling in crop plants has been reported using integrated omics approaches (Fukushima Kusano, 2014).

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Multi-omic approaches for biosynthetic pathway prediction ...

experimentally to link them to specific metabolic products18. Although knowledge of chromosomally clustered SM genes in plants dates back to 1997, when five genes required for DIBOA biosynthesis in maize (Bx1 through Bx5) were found to be clustered on chromosome 419, it took several more years to

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Genes that Jump and the Scientist who Discovered Them ...

Mar 22, 2021  You may recall the experiments of Gregor Mendel, who played with pea plants in his monastery and founded the field of genetics. To pin down traits like purple (P) or yellow (p) flowers, and tall (T) or short (t) plant height, he used self-pollinated lines of pea plants. In this way, he could identify the exact genes the pea plants had.

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Bulk to Individuality: Specifying Plants’ Cellular ...

Jan 01, 2019  15.2.4.2. Pollen Grain Proteomics. Proteomics study in isolated individual pollen provides one of the most comprehensive data sets in plant single-cell omics (Dai and Chen, 2012).Pollen proteomics studies were carried out in a good number of plant taxa including Arabidopsis, tomato, rice, maize, and Lilium spp. among angiosperms and Picea meyeri, Pinus bungeana, and Pinus strobes

get price

Unraveling lipid metabolism in maize with time‐resolved ...

Jan 31, 2018  With respect to lipid metabolism in maize, a recent effort based on the integration of the findings from (i) a GWAS of fatty acids using 368 maize inbred lines, (ii) QTL mapping of oil concentration and composition in the maize kernel of maize, using a B73 × By804 recombinant inbred ine (RIL) population, and (iii) a co-expression network based ...

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(PDF) PlantOmics: The Omics of Plant Science

This book will be a valuable resource to students and researchers in the field of cutting-edge plant omics. CONTENTS Chapter-1: Omics of Model Plants.- Chapter-2:Instrumental techniques and ...

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Multi-omics analysis of the development and fracture ...

Jun 03, 2019  The maize stalk is an important mechanical supporting tissue. The stalk fracture resistance is closely related to lodging resistance, and thus the

get price

Plant developmental stage drives the differentiation in ...

Aug 13, 2021  By using the artificial plants as “background controls” in the field, the impacts of these environmental factors on plant microbiome assembly were discerned in this study. Our results showed that both maize and fake plant phylloplane microbiomes had similar temporal patterns and shared more than one third of ZOTUs at each stage.

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Multiomics - Wikipedia

Multiomics, multi-omics, integrative omics, "panomics" or 'pan-omics' is a biological analysis approach in which the data sets are multiple "omes", such as the genome, proteome, transcriptome, epigenome, metabolome, and microbiome (i.e., a meta-genome and/or meta-transcriptome, depending upon how it is sequenced); in other words, the use of multiple omics technologies to study life in a ...

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Dynamics of Gene Expression in Single Root Cells of ...

Here, we use Arabidopsis roots to establish both experimental and analytic procedures for single cell RNA-Seq in plants. Using Monocle 3, we could assign over 3,000 cells to expected cell and tissue types with high confidence. In particular, cortex, endodermis and hair cells were easily identified.

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